To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("snpStats")

In most cases, you don't need to download the package archive at all.

snpStats

   

This package is for version 2.12 of Bioconductor; for the stable, up-to-date release version, see snpStats.

SnpMatrix and XSnpMatrix classes and methods

Bioconductor version: 2.12

Classes and statistical methods for large SNP association studies, extending the snpMatrix package (now removed)

Author: David Clayton <dc208 at cam.ac.uk>

Maintainer: David Clayton <dc208 at cam.ac.uk>

Citation (from within R, enter citation("snpStats")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("snpStats")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("snpStats")

 

PDF R Script Data input
PDF R Script Imputation and meta-analysis
PDF R Script LD statistics
PDF R Script Principal components analysis
PDF R Script snpMatrix-differences
PDF R Script snpStats introduction
PDF R Script TDT tests
PDF   Reference Manual

Details

biocViews GeneticVariability, Microarray, SNP, Software
Version 1.10.0
In Bioconductor since BioC 2.8 (R-2.13) (5 years)
License GPL-3
Depends R (>= 2.10.0), survival, methods, Matrix
Imports graphics, grDevices, methods, stats, survival, utils, Matrix, BiocGenerics
LinkingTo
Suggests hexbin
SystemRequirements
Enhances
URL
Depends On Me GGBase, GGdata, ggtut, gwascat
Imports Me FunciSNP, GGtools
Suggests Me crlmm, GWASTools, VariantAnnotation
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source snpStats_1.10.0.tar.gz
Windows Binary snpStats_1.10.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) snpStats_1.10.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/snpStats/tree/release-2.12
Package Short Url http://bioconductor.org/packages/snpStats/
Package Downloads Report Download Stats

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